python - scipy curve_fit unable to fit curve -


i trying use scipy.optimize function curve_fit fit set of data points using custom exponential function. code follows:

import numpy np import matplotlib.pyplot plt scipy.optimize import curve_fit  def fit(x, tau, beta):     return np.exp(-1 * np.power(x / tau, beta))  def plot_e2e(times, e2es):     optimalparams, covariance = curve_fit(fit, times, e2es)     tau = optimalparams[0]     beta = optimalparams[1]      print 'tau is:', tau     print 'beta is:', beta  if __name__ == '__main__':     % read_e2e_data not included proprietary reasons.     times, e2es = read_e2e_data(filename)     plot_e2e(times, e2es)

doing raises following exception (line numbers may different due taking out unrelated stuff):

traceback (most recent call last):   file ".\plot_e2e.py", line 54, in <module>     plot_e2e(times, e2es)   file ".\plot_e2e.py", line 34, in plot_e2e     optimalparams, covariance = curve_fit(fit, times, e2es)   file "c:\anaconda\lib\site-packages\scipy\optimize\minpack.py", line 586,  in curve_fit      raise runtimeerror(msg) runtimeerror: optimal parameters not found: number of calls function has reached maxfev = 600.

if increase maxfev parameter of curve_fit instead bogus values tau (4.035e-303).

my time , e2e vectors thus:

time = [0.0, 1.0, 2.0, 3.0, 4.0, 5.0, 6.0, 7.0, 9.0, 11.0, 14.0, 17.0, 21.0, 25.0, 30.0, 37.0, 45.0, 54.0, 65.0, 78.0, 94.0, 113.0, 136.0, 163.0, 196.0, 236.0, 283.0, 340.0, 409.0, 491.0] e2es = [1.0, 0.999804, 0.99964, 0.999497, 0.99937, 0.999276, 0.999139, 0.998974, 0.998566, 0.998005, 0.997225, 0.997073, 0.997793, 0.998586, 1.001542, 1.004414, 1.005311, 1.001431, 1.001016, 0.998936, 0.995649, 0.993765, 0.98663, 0.985266, 0.984635, 0.982588, 0.974413, 0.973811, 0.968772, 0.970131]

if have ideas might issue, please let me know. i've been trying debug issue , have hit dead end.


Comments

Post a Comment

Popular posts from this blog

jOOQ update returning clause with Oracle -

according http://www.jooq.org/doc/3.8/manual/sql-building/sql-statements/update-statement/ jooq doesn't support returning clause in update statements databases except firebird , postgres. does know, still correct oracle jooq? according oracle's documentation, oracle db supports returning clase delete, insert, or update statements. incorrect manual you're right - manual wrong , should fixed: https://github.com/jooq/jooq/issues/5470 single row update returning jooq 3.8 added support single row update .. returning statements. internally, uses callablestatement , pl/sql block of form: begin update "my_table" set "my_table"."column" = 'xyz' "my_table"."id" = 1 returning "my_table"."id", "my_table"."column" ?, ?; ? := sql%rowcount; end; the relevant issue is: https://github.com/jooq/jooq/issues/5190 multi row update returning a...
Read more

java - Warning equals/hashCode on @Data annotation lombok with inheritance -

i have entity inherits other. on other hand, i'm using lombok project reduce boilerplate code, put @data annotation. annotation @data inheritance produces next warning: generating equals/hashcode implementation without call superclass, though class not extend java.lang.object. if intentional, add '@equalsandhashcode(callsuper=false)' type. is advisable add annotation @equalsandhashcode (callsuper = true) or @equalsandhashcode (callsuper = false) ? if not added, 1 callsuper=false or callsuper=true ? the default value false . 1 if don't specify , ignore warning. yes, recommended add @equalsandhashcode annotation on @data annotated classes extend else object. cannot tell if need true or false , depends on class hierarchy, , need examined on case-by-case basis. however, project or package, can configure in lombok.config call super methods if not direct subclass of object. lombok.equalsandhashcode.callsuper = call for configuration system ...
Read more

java - BasicPathUsageException: Cannot join to attribute of basic type -

i using java 8 jpa (hibernate 5.2.1). have clause works perfectly, until introduce clause make use foreign key table values too. i getting following error: basicpathusageexception: cannot join attribute of basic type i think problem related fact have join table, , not sure how create join using join table. employee - employee_category - category model (employee.java): @manytomany(cascade = cascadetype.all, fetch=fetchtype.eager) @jointable ( name="employee_category", joincolumns={ @joincolumn(name="emp_id", referencedcolumnname="id") }, inversejoincolumns={ @joincolumn(name="cat_id", referencedcolumnname="id") } ) private set<category> categories; model (category.java): @id private string id; jpa when introduce following code, fails error above (i think problem new piece of code): join<t, category> category = from.join("id"); predicates.add(criteriabuilder.like(category....
Read more